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A project, and its targets, are objects using the ‘EIEIO’ object system. See EIEIO manual. These objects have data fields containing important information related to your work.
If the high-level functions aren’t enough, you can tweak all
user-customizable fields at any time by running the command
customize-project or customize-target. This loads
the current project or target into a customization buffer, where you
can tweak individual slots. This is usually necessary for complex
projects.
Some project modes do not have a project file, but directly read a
Makefile or other existing file. Instead of directly editing the
object, you can edit the file by typing C-c . e
(ede-edit-file-target). You should “rescan” the project
afterwards (see Miscellaneous commands).